Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease 7 small subunit | SHM7688_00742 | Q5LX40 | Negative | 774834 - 775076 | 8626.32 |
| histone deacetylase-like amidohydrolase | SHM7688_00743 | P72702 | Negative | 775073 - 776008 | 33232.2 |
| transcriptional regulatory protein ompr | SHM7688_00744 | P31079 | Negative | 776073 - 776774 | 26186.7 |
| marr family protein | SHM7688_00745 | P31078 | Negative | 776801 - 777298 | 18666.4 |
| branched-chain-amino-acid aminotransferase | SHM7688_00746 | Q4ULR3 | Positive | 777477 - 778346 | 32016.1 |
| long-chain-fatty-acid--coa ligase | SHM7688_00747 | O07610 | Negative | 778495 - 780006 | 54046.9 |
| carboxylate/amino acid/amine transporter | SHM7688_00748 | Not Available | Positive | 780128 - 781051 | 32942.3 |
| putative hydrolase | SHM7688_00749 | P46144 | Negative | 781063 - 781734 | 24266.9 |
| chorismate synthase | SHM7688_00750 | Q1GCR5 | Negative | 781734 - 782840 | 39507.9 |
| glyoxalase-like domain protein | SHM7688_00751 | Not Available | Negative | 782915 - 783283 | 13043.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
