Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldolase ii superfamily protein | SHM7688_00732 | Q9L9F0 | Positive | 763689 - 764444 | 28027.1 |
| fatty acid hydroxylase superfamily protein | SHM7688_00733 | A0A0E0SNE8 | Positive | 764478 - 765473 | 39183.4 |
| carnitine catabolism transcriptional activator | SHM7688_00734 | A0A0H2ZIC3 | Negative | 765477 - 766418 | 34125.0 |
| acyl-coa dehydrogenase | SHM7688_00735 | O34421 | Positive | 766496 - 767656 | 43062.2 |
| selt/selw/selh selenoprotein domain protein | SHM7688_00736 | Not Available | Positive | 767723 - 767998 | 10186.4 |
| acetyl coenzyme a synthetase (adp forming), alpha domain | SHM7688_00737 | A0A2P1BT06 | Positive | 768240 - 770261 | 70367.5 |
| carnitinyl-coa dehydratase | SHM7688_00738 | A8ALR7 | Positive | 770258 - 771043 | 28389.9 |
| hypothetical protein | SHM7688_00739 | Not Available | Positive | 771158 - 772012 | 31201.2 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SHM7688_00740 | Q5LX42 | Negative | 772063 - 773916 | 65382.5 |
| farnesyl diphosphate synthase | SHM7688_00741 | P45204 | Negative | 773953 - 774822 | 30115.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
