Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative gst-like protein yibf | SHM7688_00722 | Not Available | Negative | 754338 - 754952 | 22473.9 |
| protease synthase and sporulation protein pai 2 | SHM7688_00723 | P21341 | Negative | 754998 - 755627 | 23027.5 |
| 6,7-dimethyl-8-ribityllumazine synthase 2 | SHM7688_00724 | Q53107 | Positive | 755977 - 756417 | 15852.0 |
| glutaredoxin 2 | SHM7688_00725 | Not Available | Negative | 756414 - 757067 | 24332.2 |
| threonylcarbamoyladenosine trna methylthiotransferase mtab | SHM7688_00726 | Q9ZDB6 | Negative | 757133 - 758410 | 46786.4 |
| diaminopimelate epimerase | SHM7688_00727 | Q3IZB6 | Negative | 758407 - 759252 | 29898.3 |
| Trna-lys | Not Available | Not Available | Positive | 759360 - 759435 | Not Available |
| hypothetical protein | SHM7688_00729 | Not Available | Negative | 759676 - 759963 | 9987.33 |
| amp nucleosidase | SHM7688_00730 | P0AE13 | Negative | 760095 - 761573 | 54605.1 |
| adenine deaminase | SHM7688_00731 | Q1GCT5 | Negative | 761570 - 763378 | 63719.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
