Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division inhibitor mind | SHM7688_00712 | P45135 | Positive | 742688 - 743752 | 37016.2 |
| hypothetical protein | SHM7688_00713 | Not Available | Positive | 743749 - 744474 | 25880.0 |
| hypothetical protein | SHM7688_00714 | Not Available | Positive | 744471 - 744953 | 17440.3 |
| pbp superfamily domain protein | SHM7688_00715 | Q93KD6 | Negative | 744991 - 745797 | 28600.0 |
| arginine transport atp-binding protein artm | SHM7688_00716 | Q3IQI3 | Negative | 745794 - 746513 | 26160.8 |
| sulfate transport system permease protein cysw | SHM7688_00717 | Q93KD5 | Negative | 746507 - 747211 | 25272.0 |
| cysteine synthase | SHM7688_00718 | D2Z027 | Positive | 747609 - 748673 | 38356.3 |
| cyn operon transcriptional activator | SHM7688_00719 | Not Available | Positive | 748812 - 749696 | 31717.5 |
| nadh-quinone oxidoreductase subunit 1 | SHM7688_00720 | P56913 | Positive | 749786 - 751477 | 61311.4 |
| putative formate dehydrogenase | SHM7688_00721 | P61159 | Positive | 751479 - 754265 | 101000.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
