Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase-o subunit gamma | SHM7688_00702 | Not Available | Negative | 732367 - 733557 | 43371.1 |
| formate dehydrogenase iron-sulfur subunit | SHM7688_00703 | P27273 | Negative | 733685 - 734278 | 21268.3 |
| formate dehydrogenase h | SHM7688_00704 | P06131 | Negative | 734291 - 737185 | 107383.0 |
| formate dehydrogenase region tat target | SHM7688_00705 | Not Available | Negative | 737294 - 737485 | 6576.59 |
| chaperone protein tord | SHM7688_00706 | Not Available | Negative | 737536 - 738144 | 21945.2 |
| hypothetical protein | SHM7688_00707 | Not Available | Negative | 738141 - 738800 | 24022.6 |
| hypothetical protein | SHM7688_00708 | Not Available | Negative | 738797 - 739354 | 20759.6 |
| seven-iron ferredoxin | SHM7688_00709 | Not Available | Positive | 739679 - 741649 | 69633.7 |
| hypothetical protein | SHM7688_00710 | Not Available | Negative | 741643 - 742407 | 27360.7 |
| hypothetical protein | SHM7688_00711 | Not Available | Positive | 742487 - 742687 | 7213.59 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
