Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gdp-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase | SHM7688_00692 | A0QWG6 | Positive | 721570 - 722706 | 40698.1 |
| hypothetical protein | SHM7688_00693 | Not Available | Positive | 722699 - 722809 | 4043.94 |
| xylulose kinase | SHM7688_00694 | Q9CFG8 | Positive | 722802 - 724322 | 53805.3 |
| cdp-diacylglycerol--inositol 3-phosphatidyltransferase | SHM7688_00695 | Not Available | Positive | 724334 - 724957 | 22727.0 |
| frag1/dram/sfk1 family protein | SHM7688_00696 | Not Available | Negative | 724921 - 725670 | 27674.8 |
| abc transporter atp-binding protein yoji | SHM7688_00697 | P33951 | Negative | 725720 - 727417 | 61324.0 |
| sporulation kinase e | SHM7688_00698 | Q8Z332 | Negative | 727556 - 729502 | 71138.7 |
| regulatory protein luxo | SHM7688_00699 | Q06065 | Negative | 729552 - 730934 | 50950.8 |
| hypothetical protein | SHM7688_00700 | Not Available | Negative | 730939 - 731064 | 4301.15 |
| cytochrome c2 | SHM7688_00701 | P00037 | Negative | 731066 - 732364 | 46923.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
