Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative abc transporter-binding protein precursor | SHM7688_00682 | Not Available | Negative | 710567 - 712471 | 72334.7 |
| glutathione import atp-binding protein gsia | SHM7688_00683 | Q57RB2 | Negative | 712464 - 714242 | 64417.1 |
| 8-amino-7-oxononanoate synthase | SHM7688_00684 | A7Z4X1 | Positive | 714558 - 715784 | 44100.7 |
| hypothetical protein | SHM7688_00685 | Not Available | Positive | 715790 - 716467 | 25435.1 |
| inositol-3-phosphate synthase | SHM7688_00686 | P9WKI0 | Positive | 716464 - 717573 | 39720.3 |
| fatty acyl-coa reductase | SHM7688_00687 | Q06136 | Positive | 717578 - 718375 | 27750.8 |
| phosphatidate cytidylyltransferase | SHM7688_00688 | Q49X46 | Positive | 718372 - 719250 | 30456.5 |
| hypothetical protein | SHM7688_00689 | Not Available | Negative | 719225 - 719734 | 17938.1 |
| hypothetical protein | SHM7688_00690 | Not Available | Positive | 720057 - 720431 | 12874.3 |
| putative permeases | SHM7688_00691 | Not Available | Positive | 720428 - 721573 | 41359.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
