Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | SHM7688_00672 | Not Available | Negative | 698482 - 699624 | 40862.5 |
| phosphoserine phosphatase 1 | SHM7688_00673 | Not Available | Negative | 699621 - 700208 | 22237.6 |
| glycosyltransferase kane | SHM7688_00674 | Not Available | Negative | 700205 - 701287 | 39408.4 |
| putative teichuronic acid biosynthesis glycosyltransferase tuac | SHM7688_00675 | Not Available | Negative | 701292 - 702539 | 46143.4 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | SHM7688_00676 | Not Available | Negative | 702536 - 703741 | 44098.9 |
| udp-n-acetyl-d-glucosamine 6-dehydrogenase | SHM7688_00677 | Q04972 | Negative | 703780 - 705057 | 45573.7 |
| putative mscs family protein ykut | SHM7688_00678 | P75783 | Positive | 705236 - 707602 | 87299.8 |
| chaperone protein dnaj | SHM7688_00679 | Not Available | Positive | 707836 - 708375 | 20792.4 |
| dipeptide transport system permease protein dppc | SHM7688_00680 | Not Available | Negative | 708381 - 709532 | 42233.6 |
| dipeptide transport system permease protein dppb | SHM7688_00681 | Q8FWN8 | Negative | 709529 - 710557 | 37364.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
