Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-type uncharacterized transport system, auxiliary component | SHM7688_00662 | Not Available | Negative | 688061 - 688723 | 24529.3 |
| virulence factor mce family protein | SHM7688_00663 | Not Available | Negative | 688720 - 690834 | 73636.2 |
| putative abc transporter atp-binding protein | SHM7688_00664 | P30769 | Negative | 690838 - 691629 | 28439.6 |
| putative phospholipid abc transporter permease protein mlae | SHM7688_00665 | P45030 | Negative | 691632 - 692762 | 39668.0 |
| phenylacetic acid degradation operon negative regulatory protein paax | SHM7688_00666 | Not Available | Negative | 692887 - 693678 | 28794.8 |
| putative actinobacterial protein | SHM7688_00667 | Not Available | Positive | 693868 - 694662 | 29193.2 |
| sulfite exporter taue/safe | SHM7688_00668 | Not Available | Positive | 694703 - 695449 | 25590.3 |
| putative protease yhbu precursor | SHM7688_00669 | P76403 | Positive | 695571 - 697226 | 62668.9 |
| s-adenosyl-l-methionine methyltransferase | SHM7688_00670 | Not Available | Negative | 697260 - 697736 | 17698.1 |
| putative glycosyl transferase | SHM7688_00671 | Not Available | Negative | 697733 - 698485 | 27628.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
