Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-aminopeptidase/d-esterase | SHM7688_00642 | P9WM22 | Positive | 667779 - 668750 | 32474.5 |
| putative esterase of the alpha/beta hydrolase fold protein | SHM7688_00643 | Q63HM1 | Negative | 668747 - 669526 | 27892.3 |
| hypothetical protein | SHM7688_00644 | Not Available | Positive | 669697 - 671883 | 77998.7 |
| enterobactin exporter ents | SHM7688_00645 | Not Available | Negative | 671939 - 673141 | 42187.2 |
| 16 kda heat shock protein a | SHM7688_00646 | O86110 | Negative | 673295 - 673768 | 17436.7 |
| v8-like glu-specific endopeptidase | SHM7688_00647 | Not Available | Negative | 673959 - 674777 | 29434.5 |
| v8-like glu-specific endopeptidase | SHM7688_00648 | Not Available | Negative | 674810 - 675601 | 28146.6 |
| hypothetical protein | SHM7688_00649 | Not Available | Positive | 675751 - 676461 | 25896.1 |
| ribosomal rna large subunit methyltransferase h | SHM7688_00650 | A8LKJ4 | Negative | 676489 - 676965 | 17070.8 |
| ribosomal silencing factor rsfs | SHM7688_00651 | Q5NLX3 | Negative | 677013 - 677408 | 14253.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
