Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese transport system membrane protein mntb | SHM7688_00632 | O35024 | Negative | 655952 - 657157 | 42502.1 |
| putative zinc transport system atp-binding protein adcc | SHM7688_00633 | P96117 | Negative | 657161 - 657967 | 28669.9 |
| tromp-1 | SHM7688_00634 | O34385 | Negative | 657978 - 658940 | 34473.9 |
| deoxyribose-phosphate aldolase | SHM7688_00635 | Q91YP3 | Positive | 659132 - 660124 | 35650.9 |
| putative aldehyde dehydrogenase alda | SHM7688_00636 | A6QR56 | Positive | 660137 - 662482 | 83392.3 |
| ribose and galactose chemoreceptor protein | SHM7688_00637 | Not Available | Positive | 662713 - 664818 | 75723.3 |
| hypothetical protein | SHM7688_00638 | Not Available | Negative | 664891 - 665076 | 7072.38 |
| organic hydroperoxide resistance transcriptional regulator | SHM7688_00639 | Q2G0B1 | Negative | 665246 - 665710 | 16965.7 |
| general stress protein 17o | SHM7688_00640 | Not Available | Positive | 665834 - 666259 | 14368.0 |
| creatinase | SHM7688_00641 | P19213 | Negative | 666341 - 667549 | 44362.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
