Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine dehydrogenase | SHM7688_00622 | P43065 | Positive | 644060 - 645115 | 37500.6 |
| lysine 6-dehydrogenase | SHM7688_00623 | Q9P4R4 | Positive | 645130 - 646272 | 41382.0 |
| azoreductase | SHM7688_00624 | Not Available | Negative | 646346 - 646939 | 21834.6 |
| putative hth-type transcriptional regulator yvdt | SHM7688_00625 | Not Available | Positive | 647043 - 647621 | 21282.8 |
| hypothetical protein | SHM7688_00626 | Not Available | Negative | 647639 - 648046 | 14915.5 |
| dna recombination protein rmuc | SHM7688_00627 | Q9PG89 | Negative | 648194 - 649516 | 48450.4 |
| dna mismatch repair protein mutl | SHM7688_00628 | B4RA70 | Negative | 649513 - 651456 | 68914.1 |
| taurine--pyruvate aminotransferase | SHM7688_00629 | Q9A3Q9 | Positive | 651652 - 653004 | 48583.9 |
| putative sulfate transporterc/mt1781 | SHM7688_00630 | Q9FY46 | Positive | 653269 - 655017 | 61911.3 |
| manganese transport system membrane protein mntb | SHM7688_00631 | Q9KD29 | Negative | 655029 - 655955 | 31621.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
