Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative ctpa-like serine protease | SHM7688_00612 | Q44879 | Negative | 628446 - 629783 | 47916.1 |
| membrane-bound metallopeptidase | SHM7688_00613 | Not Available | Negative | 629787 - 630935 | 39853.9 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | SHM7688_00614 | Q1GCX7 | Negative | 630932 - 632461 | 53783.6 |
| putative membrane protein | SHM7688_00615 | Not Available | Negative | 632596 - 634653 | 74266.2 |
| hypothetical protein | SHM7688_00616 | Not Available | Negative | 634650 - 637466 | 99536.3 |
| hypothetical protein | SHM7688_00617 | Not Available | Negative | 637463 - 638365 | 33098.7 |
| gas vesicle protein gvpn | SHM7688_00618 | Not Available | Negative | 638362 - 639369 | 35988.6 |
| hypothetical protein | SHM7688_00619 | Not Available | Positive | 639455 - 640039 | 20982.6 |
| putative hydroxypyruvate isomerase ygbm | SHM7688_00620 | Q0KBD1 | Positive | 640141 - 640893 | 28163.4 |
| dna polymerase i | SHM7688_00621 | Q9S1G2 | Negative | 640968 - 643766 | 102719.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
