Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00592 | Not Available | Positive | 611117 - 611398 | 10828.9 |
| quorum-sensing regulator protein d | SHM7688_00593 | Not Available | Negative | 611661 - 612563 | 33222.4 |
| l-cysteate sulfo-lyase | SHM7688_00594 | Q5LL69 | Positive | 612686 - 613699 | 36336.5 |
| aspartate racemase | SHM7688_00595 | Not Available | Positive | 613703 - 614407 | 24181.3 |
| enamine/imine deaminase | SHM7688_00596 | O30825 | Positive | 614428 - 614775 | 12541.0 |
| quorum-sensing regulator protein d | SHM7688_00597 | P39376 | Negative | 614804 - 615688 | 33076.5 |
| glycine betaine transporter periplasmic subunit | SHM7688_00598 | Not Available | Positive | 615961 - 616926 | 34956.2 |
| glycine betaine/carnitine transport atp-binding protein gbua | SHM7688_00599 | Q9KIF7 | Positive | 617016 - 618080 | 38589.0 |
| glycine betaine transport system permease protein opuab | SHM7688_00600 | P14176 | Positive | 618077 - 619627 | 56272.4 |
| dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system | SHM7688_00601 | B1M5I5 | Positive | 619624 - 620343 | 26350.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
