Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putrescine-binding periplasmic protein precursor | SHM7688_00572 | Q9I6J0 | Negative | 594765 - 595859 | 40158.3 |
| autoinducer 2 sensor kinase/phosphatase luxq | SHM7688_00573 | Not Available | Negative | 595850 - 597691 | 67334.2 |
| putative aliphatic sulfonates transport permease protein ssuc | SHM7688_00574 | Q57306 | Negative | 597927 - 598661 | 26170.0 |
| aliphatic sulfonates import atp-binding protein ssub | SHM7688_00575 | P44656 | Negative | 598658 - 599386 | 25874.5 |
| thiaminase-2 | SHM7688_00576 | P44659 | Negative | 599383 - 600063 | 24835.4 |
| putative thiamine biosynthesis protein | SHM7688_00577 | P44658 | Negative | 600060 - 600995 | 33548.2 |
| molybdopterin-synthase adenylyltransferase | SHM7688_00578 | D4GSF3 | Negative | 601012 - 601977 | 32982.9 |
| thiamine-phosphate synthase | SHM7688_00579 | O34294 | Negative | 601974 - 602570 | 22065.7 |
| thiazole synthase | SHM7688_00580 | Q5LWJ1 | Negative | 602567 - 603340 | 27307.8 |
| sulfur carrier protein this | SHM7688_00581 | Not Available | Negative | 603342 - 603536 | 6634.02 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
