Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-acetyltransferase oata | SHM7688_00562 | Q8Y7I6 | Positive | 581969 - 584083 | 76815.1 |
| 6'''-hydroxyparomomycin c oxidase | SHM7688_00563 | M1VMF7 | Positive | 584080 - 585678 | 57167.7 |
| 2-(r)-hydroxypropyl-com dehydrogenase | SHM7688_00564 | P50161 | Positive | 585678 - 586433 | 26524.1 |
| putative n-acetylmannosaminyltransferase | SHM7688_00565 | Not Available | Negative | 586415 - 587170 | 26462.4 |
| putative oxidoreductase yvaa | SHM7688_00566 | Not Available | Positive | 587382 - 588524 | 41630.5 |
| hopanoid-associated sugar epimerase | SHM7688_00567 | Not Available | Positive | 588521 - 589510 | 35005.2 |
| gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase | SHM7688_00568 | Q58577 | Positive | 589528 - 590751 | 44117.7 |
| mycofactocin system glycosyltransferase | SHM7688_00569 | Not Available | Positive | 590748 - 591731 | 36440.3 |
| putative oxidoreductase ycjs | SHM7688_00570 | Q9ZA33 | Positive | 591728 - 593848 | 75926.0 |
| putative tyrosine-protein kinase in cps region | SHM7688_00571 | Not Available | Positive | 593948 - 594724 | 27836.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
