Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00552 | Not Available | Negative | 565043 - 565354 | 11712.5 |
| hypothetical protein | SHM7688_00553 | Not Available | Negative | 565370 - 566413 | 40066.5 |
| chondramide synthase cmdd | SHM7688_00554 | Q0VZ70 | Positive | 566983 - 570723 | 134327.0 |
| n-acetylglucosaminyl-diphospho-decaprenol l-rhamnosyltransferase | SHM7688_00555 | Not Available | Positive | 570720 - 571742 | 37958.6 |
| dimodular nonribosomal peptide synthase | SHM7688_00556 | P45745 | Positive | 571739 - 576400 | 167214.0 |
| phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | SHM7688_00557 | Q9F0Q6 | Positive | 576409 - 577128 | 25356.6 |
| polysaccharide chain length determinant protein, pep-cterm locus subfamily | SHM7688_00558 | Not Available | Positive | 577203 - 578474 | 47433.9 |
| undecaprenyl phosphate n,n'-diacetylbacillosamine 1-phosphate transferase | SHM7688_00559 | Q46628 | Positive | 578989 - 579654 | 25073.8 |
| lipid a core-o-antigen ligase | SHM7688_00560 | Not Available | Positive | 579785 - 581302 | 55933.5 |
| serine acetyltransferase | SHM7688_00561 | P95231 | Negative | 581321 - 581833 | 18163.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
