Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| high-affinity zinc uptake system protein znua precursor | SHM7688_00542 | Q8YDJ7 | Negative | 553930 - 555039 | 40128.5 |
| zinc uptake regulation protein | SHM7688_00543 | P0AC51 | Positive | 555144 - 555635 | 17289.9 |
| zinc import atp-binding protein znuc | SHM7688_00544 | Q1GL85 | Positive | 555590 - 556384 | 28442.3 |
| high-affinity zinc uptake system membrane protein znub | SHM7688_00545 | P39832 | Positive | 556350 - 557177 | 28264.6 |
| esterase estb | SHM7688_00546 | P9WLZ2 | Negative | 557333 - 558589 | 44599.4 |
| hypothetical protein | SHM7688_00547 | Not Available | Positive | 558796 - 561828 | 110581.0 |
| transferase 2, rsam/selenodomain-associated | SHM7688_00548 | Not Available | Positive | 561925 - 562746 | 28881.8 |
| lipopolysaccharide biosynthesis protein wzxc | SHM7688_00549 | Not Available | Positive | 562743 - 564110 | 49168.6 |
| hypothetical protein | SHM7688_00550 | Not Available | Negative | 564176 - 564556 | 14310.9 |
| hypothetical protein | SHM7688_00551 | Not Available | Negative | 564635 - 565021 | 14332.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
