Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00532 | Not Available | Negative | 542283 - 542723 | 16147.7 |
| hypothetical protein | SHM7688_00533 | Not Available | Positive | 542897 - 543199 | 10794.0 |
| hypothetical protein | SHM7688_00534 | Not Available | Positive | 543171 - 543875 | 25161.2 |
| adenylate cyclase 1 | SHM7688_00535 | P9WQ30 | Positive | 543960 - 545513 | 56051.5 |
| gluconate utilization system gnt-i transcriptional repressor | SHM7688_00536 | Not Available | Positive | 545602 - 546618 | 36528.1 |
| hypothetical protein | SHM7688_00537 | Not Available | Negative | 546619 - 547542 | 34925.8 |
| mannosyltransferase och1 | SHM7688_00538 | Not Available | Negative | 547545 - 548552 | 38394.8 |
| hypothetical protein | SHM7688_00539 | Not Available | Negative | 548638 - 550896 | 84118.3 |
| hypothetical protein | SHM7688_00540 | Not Available | Negative | 550944 - 552050 | 41138.9 |
| nickel-binding periplasmic protein precursor | SHM7688_00541 | Not Available | Positive | 552178 - 553917 | 63972.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
