Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-d-manno-octulosonic acid transferase | SHM7688_00522 | Not Available | Positive | 532917 - 534137 | 44249.0 |
| tetraacyldisaccharide 4'-kinase | SHM7688_00523 | A8LJV4 | Positive | 534134 - 535141 | 35763.1 |
| thiol-disulfide oxidoreductase d | SHM7688_00524 | Not Available | Negative | 535163 - 535843 | 24564.1 |
| zn-ribbon-containing, possibly rna-binding protein and truncated derivatives | SHM7688_00525 | Not Available | Negative | 535844 - 536359 | 18958.8 |
| hypothetical protein | SHM7688_00526 | Not Available | Negative | 536392 - 536925 | 19311.5 |
| hypothetical protein | SHM7688_00527 | Not Available | Positive | 537274 - 537534 | 9786.51 |
| alkane 1-monooxygenase 2 | SHM7688_00528 | Q6H941 | Positive | 537598 - 538731 | 43782.4 |
| adenylate cyclase 1 | SHM7688_00529 | P40137 | Negative | 538728 - 540143 | 52543.8 |
| modification methylase dpniib | SHM7688_00530 | P0CAW2 | Negative | 540325 - 541440 | 41694.9 |
| ribonuclease hii | SHM7688_00531 | Q1GD84 | Negative | 541543 - 542178 | 22635.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
