Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00512 | Not Available | Positive | 523761 - 524117 | 12614.7 |
| ribose import atp-binding protein rbsa | SHM7688_00513 | A2RKA7 | Positive | 524114 - 525697 | 56923.7 |
| ribose abc transporter permease protein | SHM7688_00514 | Not Available | Positive | 525690 - 526784 | 39225.0 |
| l-arabinose transporter permease protein | SHM7688_00515 | O05255 | Positive | 526784 - 527794 | 35732.2 |
| sulfite exporter taue/safe | SHM7688_00516 | O32134 | Positive | 527885 - 528820 | 32721.0 |
| putative transmembrane protein (alph_pro_tm) | SHM7688_00517 | Not Available | Positive | 528823 - 529578 | 27536.1 |
| peptidase pmba | SHM7688_00518 | P0AFK1 | Positive | 529652 - 530998 | 46991.4 |
| inositol-1-monophosphatase | SHM7688_00519 | Q9JU03 | Positive | 530985 - 531785 | 28601.9 |
| gmp synthase | SHM7688_00520 | Not Available | Negative | 531770 - 532510 | 27179.8 |
| hypothetical protein | SHM7688_00521 | Not Available | Positive | 532667 - 532909 | 9051.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
