Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-lactate dehydrogenase | SHM7688_00502 | P06149 | Negative | 514334 - 516016 | 62051.5 |
| putative enoyl-coa hydratase echa8 | SHM7688_00503 | P77467 | Negative | 516206 - 516817 | 21074.9 |
| glucose 1-dehydrogenase | SHM7688_00504 | P14802 | Negative | 516814 - 517626 | 28462.0 |
| hypothetical protein | SHM7688_00505 | Not Available | Positive | 517728 - 519230 | 52882.2 |
| branched-chain-amino-acid aminotransferase | SHM7688_00506 | O27481 | Positive | 519407 - 520270 | 31251.1 |
| universal stress protein family protein | SHM7688_00507 | Not Available | Positive | 520382 - 520837 | 16743.3 |
| fe/s biogenesis protein nfua | SHM7688_00508 | Q9LIG6 | Positive | 520942 - 521505 | 19731.4 |
| t(6)a37 threonylcarbamoyladenosine biosynthesis protein | SHM7688_00509 | Q87RD1 | Positive | 521515 - 522105 | 20490.7 |
| ribosomal-protein-alanine n-acetyltransferase | SHM7688_00510 | Not Available | Positive | 522117 - 522515 | 14145.7 |
| purine nucleoside receptor a | SHM7688_00511 | O05252 | Positive | 522686 - 523675 | 34262.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
