Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin | SHM7688_00492 | P39767 | Negative | 503317 - 504225 | 31288.5 |
| hypothetical protein | SHM7688_00493 | Not Available | Positive | 504537 - 505013 | 17375.7 |
| gdp-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase | SHM7688_00494 | Not Available | Negative | 505102 - 506364 | 47708.3 |
| leucine--trna ligase | SHM7688_00495 | Q1GKN8 | Positive | 506549 - 509122 | 95287.8 |
| hypothetical protein | SHM7688_00496 | Not Available | Positive | 509109 - 509612 | 17862.2 |
| dna polymerase iii subunit delta | SHM7688_00497 | Not Available | Positive | 509609 - 510640 | 37155.6 |
| glutathione s-transferase gst-6.0 | SHM7688_00498 | Not Available | Positive | 510832 - 511422 | 22279.8 |
| putative flavoprotein, family | SHM7688_00499 | Not Available | Negative | 511435 - 512598 | 41500.5 |
| potassium efflux system kefa precursor | SHM7688_00500 | O28726 | Negative | 512595 - 513914 | 48201.1 |
| hypothetical protein | SHM7688_00501 | Not Available | Positive | 514013 - 514330 | 11867.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
