Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-octaprenyl-6-methoxyphenol hydroxylase | SHM7688_00482 | Not Available | Positive | 495070 - 496284 | 43238.7 |
| hypothetical protein | SHM7688_00483 | Q1GKM7 | Negative | 496415 - 496621 | 7371.93 |
| lon protease 2 | SHM7688_00484 | Not Available | Negative | 496618 - 497262 | 24139.0 |
| thioredoxin-m | SHM7688_00485 | P77395 | Negative | 497316 - 498242 | 32273.1 |
| exodeoxyribonuclease iii | SHM7688_00486 | P09030 | Negative | 498420 - 499208 | 29551.8 |
| transcriptional regulatory protein yycf | SHM7688_00487 | A0QTK2 | Negative | 499537 - 500223 | 25794.0 |
| gtp cyclohydrolase-2 | SHM7688_00488 | P43525 | Positive | 500398 - 501492 | 39463.6 |
| l,d-transpeptidase catalytic domain | SHM7688_00489 | Not Available | Positive | 501489 - 501992 | 18377.9 |
| hypothetical protein | SHM7688_00490 | Not Available | Negative | 501998 - 502390 | 13986.8 |
| pyridoxal phosphate enzyme, yggs family | SHM7688_00491 | P24562 | Negative | 502559 - 503209 | 23111.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
