Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gdsl-like lipase/acylhydrolase | SHM7688_00472 | Not Available | Positive | 482898 - 483608 | 25795.2 |
| putative chloramphenical resistance permease rard | SHM7688_00473 | Q9KVF1 | Negative | 483616 - 484524 | 32685.9 |
| aminomethyltransferase | SHM7688_00474 | Q8GAI3 | Negative | 484638 - 487088 | 89819.7 |
| homocysteine s-methyltransferase | SHM7688_00475 | Not Available | Negative | 487177 - 488079 | 31424.3 |
| aminomethyltransferase | SHM7688_00476 | Q9DBT9 | Negative | 488076 - 490526 | 90566.2 |
| leucine efflux protein | SHM7688_00477 | Not Available | Negative | 490538 - 491161 | 21431.9 |
| hypothetical protein | SHM7688_00478 | Not Available | Negative | 491164 - 491466 | 10919.9 |
| hth-type transcriptional regulator puur | SHM7688_00479 | Not Available | Negative | 491546 - 492118 | 20917.8 |
| ribosomal rna large subunit methyltransferase l | SHM7688_00480 | Q55156 | Negative | 492456 - 493568 | 39670.6 |
| glutamyl-trna(gln) amidotransferase subunit a | SHM7688_00481 | Q38M35 | Negative | 493658 - 494986 | 46652.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
