Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer-membrane lipoprotein carrier protein precursor | SHM7688_00462 | Not Available | Negative | 472809 - 473414 | 21920.4 |
| dna translocase ftsk | SHM7688_00463 | Q8U526 | Negative | 473486 - 476428 | 105548.0 |
| ll-diaminopimelate aminotransferase | SHM7688_00464 | Not Available | Negative | 476436 - 477626 | 43400.5 |
| ssra-binding protein | SHM7688_00465 | Q16BP2 | Positive | 477750 - 478289 | 20736.2 |
| hypothetical protein | SHM7688_00466 | Not Available | Negative | 478277 - 478999 | 26613.7 |
| 3-mercaptopyruvate sulfurtransferase | SHM7688_00467 | O64530 | Positive | 479160 - 480014 | 30882.6 |
| aromatic-amino-acid aminotransferase | SHM7688_00468 | P95468 | Positive | 480014 - 481198 | 43086.9 |
| free methionine-r-sulfoxide reductase | SHM7688_00469 | Q8MTJ7 | Positive | 481258 - 481716 | 16031.0 |
| ribosomal large subunit pseudouridine synthase a | SHM7688_00470 | P0AA37 | Negative | 481720 - 482382 | 24614.1 |
| snoal-like domain protein | SHM7688_00471 | Not Available | Positive | 482480 - 482890 | 15514.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
