Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i secretion system atp-binding protein prsd | SHM7688_00452 | Q03024 | Negative | 463744 - 465477 | 62038.4 |
| putative phospholipid-binding lipoprotein mlaa precursor | SHM7688_00453 | Not Available | Positive | 465594 - 466436 | 30651.0 |
| abc transporter periplasmic binding protein mlac | SHM7688_00454 | Not Available | Positive | 466423 - 467031 | 22057.8 |
| penicillin-binding protein 2d | SHM7688_00455 | P0A0Z5 | Negative | 467096 - 469258 | 77751.0 |
| nitrogen regulatory protein p-ii | SHM7688_00456 | Q9CJK1 | Positive | 469515 - 469853 | 12195.9 |
| ammonia transporter | SHM7688_00457 | P54147 | Positive | 469879 - 471213 | 46443.0 |
| hypothetical protein | SHM7688_00458 | Not Available | Positive | 471300 - 471671 | 13944.3 |
| putative small protein | SHM7688_00459 | Not Available | Negative | 471713 - 471937 | 8350.77 |
| 16 kda heat shock protein a | SHM7688_00460 | A8ACK0 | Negative | 471942 - 472355 | 15288.3 |
| hypothetical protein | SHM7688_00461 | Not Available | Positive | 472562 - 472786 | 8435.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
