Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinamide-nucleotide amidohydrolase pncc | SHM7688_00442 | O28033 | Negative | 455446 - 456165 | 25329.1 |
| sugar fermentation stimulation protein a | SHM7688_00443 | Q1GDR6 | Positive | 456212 - 456916 | 25883.9 |
| methionine aminopeptidase | SHM7688_00444 | Q9ZCD3 | Positive | 457009 - 457875 | 31491.6 |
| ribosomal rna small subunit methyltransferase d | SHM7688_00445 | P0ADY0 | Negative | 457877 - 458446 | 20009.3 |
| ferredoxin--nad(p)(+) reductase fdr | SHM7688_00446 | Q5S3I2 | Negative | 458443 - 459651 | 43092.1 |
| putative peroxiredoxin | SHM7688_00447 | Q9XEX2 | Positive | 459736 - 460224 | 17056.3 |
| putative pterin-4-alpha-carbinolamine dehydratase | SHM7688_00448 | Q16BN1 | Negative | 460285 - 460575 | 10952.9 |
| femab-related protein, pep-cterm system-associated | SHM7688_00449 | Not Available | Negative | 460572 - 461753 | 44161.6 |
| putative endoribonuclease l-psp | SHM7688_00450 | O96876 | Negative | 461899 - 462360 | 15910.2 |
| type i secretion system membrane fusion protein prse | SHM7688_00451 | Not Available | Negative | 462443 - 463747 | 48065.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
