Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-malate degradation protein r | SHM7688_00432 | Not Available | Negative | 447001 - 447906 | 33211.5 |
| sulfotransferase family protein | SHM7688_00433 | Not Available | Negative | 448140 - 448958 | 31510.2 |
| core-2/i-branching enzyme | SHM7688_00434 | Not Available | Positive | 449106 - 450683 | 61453.9 |
| daunorubicin/doxorubicin resistance atp-binding protein drra | SHM7688_00435 | Not Available | Negative | 450750 - 451682 | 33613.4 |
| zinc-finger domain protein | SHM7688_00436 | Not Available | Positive | 451811 - 451993 | 6693.85 |
| bifunctional rnase h/acid phosphatase | SHM7688_00437 | Not Available | Negative | 452055 - 452714 | 24693.3 |
| hypothetical protein | SHM7688_00438 | Not Available | Negative | 452838 - 453065 | 8591.52 |
| outer membrane porin f precursor | SHM7688_00439 | P22263 | Negative | 453163 - 454137 | 34249.4 |
| putative peroxidase-related enzyme | SHM7688_00440 | Not Available | Negative | 454134 - 454706 | 21192.4 |
| putative acetyltransferase | SHM7688_00441 | Not Available | Negative | 454718 - 455446 | 26361.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
