Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00422 | P46837 | Negative | 431462 - 433822 | 83276.9 |
| atp phosphoribosyltransferase | SHM7688_00423 | O08385 | Negative | 433977 - 434675 | 25341.4 |
| histidine--trna ligase | SHM7688_00424 | A6X3C2 | Negative | 434672 - 435757 | 39120.6 |
| histidine--trna ligase | SHM7688_00425 | Q1GJD0 | Negative | 435757 - 437259 | 54668.0 |
| inner membrane protein yqik | SHM7688_00426 | P77306 | Negative | 437444 - 439132 | 61119.9 |
| inner membrane protein yqij | SHM7688_00427 | Not Available | Negative | 439175 - 439876 | 24458.7 |
| mobile mystery protein a | SHM7688_00428 | Not Available | Positive | 440044 - 440538 | 18566.0 |
| slyx | SHM7688_00429 | Not Available | Positive | 440588 - 440782 | 7253.56 |
| dna polymerase iii subunit alpha | SHM7688_00430 | Q9A700 | Positive | 440944 - 444462 | 129571.0 |
| 2,4-dienoyl-coa reductase | SHM7688_00431 | P42593 | Positive | 444833 - 446860 | 72838.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
