Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phng | SHM7688_00412 | Q52984 | Negative | 422887 - 423330 | 15821.1 |
| putative transcriptional regulator phnf | SHM7688_00413 | P44487 | Positive | 423444 - 424157 | 26230.3 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | SHM7688_00414 | Not Available | Positive | 424247 - 425428 | 42725.8 |
| chloramphenicol acetyltransferase | SHM7688_00415 | P50868 | Negative | 425495 - 426112 | 22752.9 |
| phosphate-import permease protein phne | SHM7688_00416 | Not Available | Negative | 426242 - 427567 | 49143.4 |
| phosphate-import permease protein phne | SHM7688_00417 | O69053 | Negative | 427564 - 428457 | 32618.6 |
| phosphate-import protein phnd precursor | SHM7688_00418 | P16682 | Negative | 428525 - 429427 | 31951.0 |
| phosphate-import atp-binding protein phnc | SHM7688_00419 | Not Available | Negative | 429486 - 430316 | 29875.9 |
| Trna-met | Not Available | Not Available | Positive | 430660 - 430736 | Not Available |
| 3-dehydroquinate dehydratase | SHM7688_00421 | Q3IWV4 | Positive | 430858 - 431295 | 15573.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
