Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative enzyme related to lactoylglutathione lyase | SHM7688_00402 | Not Available | Positive | 415482 - 415868 | 13608.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | SHM7688_00403 | Not Available | Negative | 415945 - 417090 | 41060.9 |
| putative phosphonate metabolism protein | SHM7688_00404 | Not Available | Positive | 417143 - 417826 | 25095.2 |
| ribose 1,5-bisphosphate phosphokinase phnn | SHM7688_00405 | Q1GL02 | Negative | 417808 - 418362 | 18751.4 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnl | SHM7688_00406 | P16679 | Negative | 418362 - 419063 | 25009.1 |
| putative phosphonates utilization atp-binding protein phnk | SHM7688_00407 | P16678 | Negative | 419109 - 419879 | 28259.2 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase | SHM7688_00408 | Q52987 | Negative | 419876 - 420745 | 32143.1 |
| hypothetical protein | SHM7688_00409 | Not Available | Negative | 420742 - 421215 | 17026.5 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phni | SHM7688_00410 | Q52986 | Negative | 421212 - 422318 | 40844.4 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnh | SHM7688_00411 | Not Available | Negative | 422318 - 422887 | 20015.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
