Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00392 | Not Available | Negative | 405980 - 406816 | 30954.4 |
| putative 3-hydroxybutyryl-coa dehydrogenase | SHM7688_00393 | Q45223 | Positive | 406977 - 407852 | 31902.7 |
| hypothetical protein | SHM7688_00394 | Not Available | Negative | 407967 - 408854 | 33342.2 |
| phosphocarrier protein npr | SHM7688_00395 | P65876 | Negative | 408885 - 409163 | 9330.06 |
| eiiab-man | SHM7688_00396 | Not Available | Negative | 409168 - 409560 | 13760.6 |
| glmz(srna)-inactivating ntpase | SHM7688_00397 | Q5LVI8 | Negative | 409557 - 410489 | 33977.5 |
| hpr kinase/phosphorylase | SHM7688_00398 | Not Available | Negative | 410490 - 410969 | 16741.1 |
| alkaline phosphatase synthesis sensor protein phor | SHM7688_00399 | P72292 | Negative | 410973 - 412667 | 60451.1 |
| transcriptional regulatory protein creb | SHM7688_00400 | P50351 | Negative | 412702 - 413403 | 26802.1 |
| phosphoenolpyruvate carboxykinase | SHM7688_00401 | Q5LVJ2 | Positive | 413779 - 415377 | 58620.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
