Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00382 | Not Available | Positive | 395578 - 395910 | 12199.7 |
| hypothetical protein | SHM7688_00383 | Not Available | Negative | 396848 - 397474 | 22749.2 |
| putative bifunctional p-450/nadph-p450 reductase 2 | SHM7688_00384 | C9K1X6 | Positive | 397526 - 399007 | 53954.7 |
| dna topoisomerase 4 subunit a | SHM7688_00385 | Q59749 | Negative | 399036 - 401423 | 89012.1 |
| sh3 domain protein | SHM7688_00386 | Not Available | Positive | 401543 - 402130 | 20161.9 |
| putative ketoacyl reductase | SHM7688_00387 | P0AFP5 | Positive | 402220 - 403053 | 30805.2 |
| hypothetical protein | SHM7688_00388 | Not Available | Positive | 403135 - 403329 | 6969.97 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | SHM7688_00389 | P64804 | Positive | 403353 - 403925 | 20578.3 |
| electron transfer flavoprotein small subunit | SHM7688_00390 | P38975 | Positive | 404203 - 404961 | 26986.7 |
| electron transfer flavoprotein large subunit | SHM7688_00391 | P38974 | Positive | 404961 - 405890 | 31095.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
