Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphohistidine phosphatase | SHM7688_00372 | Not Available | Negative | 387471 - 387971 | 18486.2 |
| hypothetical protein | SHM7688_00373 | Not Available | Negative | 387968 - 388594 | 22283.4 |
| acetylglutamate kinase | SHM7688_00374 | Q5LW17 | Negative | 388688 - 389551 | 30205.6 |
| ribonuclease p | SHM7688_00375 | Q5LW06 | Negative | 389818 - 390246 | 15723.3 |
| 50s ribosomal protein l34 | SHM7688_00376 | Q1GJX0 | Negative | 390300 - 390434 | 5153.46 |
| snare associated golgi protein | SHM7688_00377 | Not Available | Positive | 390845 - 391585 | 26238.5 |
| mercuric reductase | SHM7688_00378 | P30341 | Positive | 391589 - 393007 | 49874.4 |
| sensor protein zras | SHM7688_00379 | Q55932 | Positive | 393027 - 394415 | 50173.4 |
| Trna-arg | Not Available | Not Available | Positive | 394478 - 394554 | Not Available |
| hypothetical protein | SHM7688_00381 | Not Available | Negative | 395152 - 395253 | 3770.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
