Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| periplasmic ph-dependent serine endoprotease degq precursor | SHM7688_00362 | A6VUA4 | Positive | 376995 - 378377 | 48459.4 |
| replication-associated recombination protein a | SHM7688_00363 | P39918 | Positive | 378389 - 379711 | 48108.5 |
| camphor resistance protein crcb | SHM7688_00364 | Q1GJZ3 | Positive | 379826 - 380215 | 13174.8 |
| ribosomal large subunit pseudouridine synthase c | SHM7688_00365 | P59835 | Positive | 380212 - 381258 | 38302.1 |
| pyrophosphatase ppax | SHM7688_00366 | Q5E2G4 | Positive | 381336 - 382010 | 23999.7 |
| atp12 chaperone protein | SHM7688_00367 | Q8N5M1 | Positive | 382007 - 382720 | 26056.7 |
| general l-amino acid-binding periplasmic protein aapj precursor | SHM7688_00368 | Q52663 | Positive | 382920 - 383936 | 35398.7 |
| putative glutamine abc transporter permease protein glnm | SHM7688_00369 | Q52664 | Positive | 384060 - 385292 | 45127.2 |
| inner membrane amino-acid abc transporter permease protein yhdy | SHM7688_00370 | Q52665 | Positive | 385296 - 386591 | 47047.6 |
| glutamine transport atp-binding protein glnq | SHM7688_00371 | Q52666 | Positive | 386606 - 387397 | 29851.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
