Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycei-like domain protein | SHM7688_00352 | Not Available | Positive | 369353 - 369937 | 20809.1 |
| cytochrome c550 | SHM7688_00353 | P59218 | Positive | 370005 - 370379 | 13126.8 |
| sigma-w factor | SHM7688_00354 | Q7AKG9 | Positive | 370405 - 370941 | 20329.1 |
| putative transmembrane transcriptional regulator (anti-sigma factor) | SHM7688_00355 | Not Available | Positive | 370931 - 371689 | 26965.2 |
| hypothetical protein | SHM7688_00356 | Not Available | Positive | 371898 - 372914 | 36938.8 |
| hypothetical protein | SHM7688_00357 | Q1GK06 | Positive | 373122 - 373490 | 13691.8 |
| hypothetical protein | SHM7688_00358 | Q1GK05 | Positive | 373506 - 373895 | 13804.5 |
| dna-directed rna polymerase subunit alpha | SHM7688_00359 | Q1GK04 | Positive | 374012 - 375028 | 37097.2 |
| 50s ribosomal protein l17 | SHM7688_00360 | Q16AB7 | Positive | 375193 - 375612 | 15800.2 |
| monomeric sarcosine oxidase | SHM7688_00361 | Not Available | Positive | 375750 - 376919 | 40768.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
