Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s8 | SHM7688_00342 | Q1GK15 | Positive | 363223 - 363612 | 14067.9 |
| hypothetical protein | SHM7688_00343 | A8LM72 | Positive | 363625 - 364158 | 19364.4 |
| 50s ribosomal protein l18 | SHM7688_00344 | Q16AC8 | Positive | 364170 - 364532 | 13030.9 |
| 30s ribosomal protein s5 | SHM7688_00345 | Q1GK12 | Positive | 364655 - 365218 | 20439.8 |
| 50s ribosomal protein l30 | SHM7688_00346 | Q5LW40 | Positive | 365232 - 365420 | 7083.81 |
| hypothetical protein | SHM7688_00347 | Not Available | Positive | 365750 - 365965 | 8086.69 |
| hypothetical protein | SHM7688_00348 | Not Available | Positive | 366199 - 366411 | 8272.81 |
| 50s ribosomal protein l15 | SHM7688_00349 | Q5LW38 | Positive | 366648 - 367121 | 16486.2 |
| preprotein translocase subunit secy | SHM7688_00350 | Q1RHP1 | Positive | 367230 - 368594 | 49193.2 |
| adenylate kinase | SHM7688_00351 | Q28UT2 | Positive | 368591 - 369166 | 20385.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
