Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine betaine-na(+) symporter | SHM7688_00332 | Q87NZ5 | Positive | 357313 - 358896 | 56617.3 |
| homoserine/homoserine lactone efflux protein | SHM7688_00333 | Not Available | Negative | 358973 - 359599 | 21898.4 |
| hypothetical protein | SHM7688_00334 | Not Available | Negative | 359722 - 360153 | 14997.3 |
| hypothetical protein | SHM7688_00335 | Not Available | Positive | 360698 - 360946 | 9889.83 |
| 50s ribosomal protein l29 | SHM7688_00336 | Q16AD6 | Positive | 361106 - 361306 | 7407.76 |
| 30s ribosomal protein s17 | SHM7688_00337 | Q1GK20 | Positive | 361321 - 361551 | 8712.52 |
| hypothetical protein | SHM7688_00338 | Q5LW48 | Positive | 361652 - 362020 | 13469.6 |
| hypothetical protein | SHM7688_00339 | Q5LW47 | Positive | 362022 - 362333 | 10874.3 |
| hypothetical protein | SHM7688_00340 | Q1GK17 | Positive | 362326 - 362886 | 20720.1 |
| hypothetical protein | SHM7688_00341 | Q1GK16 | Positive | 362905 - 363210 | 11678.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
