Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclolysin | SHM7688_00312 | Not Available | Positive | 337670 - 340396 | 91278.1 |
| protease production enhancer protein | SHM7688_00313 | O07528 | Negative | 340415 - 341131 | 25481.6 |
| oxidoreductase molybdopterin binding domain protein | SHM7688_00314 | Not Available | Positive | 341372 - 341869 | 18007.2 |
| autoinducer 2 sensor kinase/phosphatase luxq | SHM7688_00315 | Not Available | Positive | 341906 - 344413 | 90673.4 |
| 6-phosphogluconate dehydrogenase, decarboxylating | SHM7688_00316 | P21577 | Negative | 344420 - 345820 | 49610.4 |
| thermoresistant gluconokinase | SHM7688_00317 | P39208 | Negative | 345966 - 346502 | 19962.3 |
| hypothetical protein | SHM7688_00318 | Q5LLU5 | Positive | 346799 - 347107 | 11533.1 |
| 50s ribosomal protein l3 | SHM7688_00319 | Q1GK37 | Positive | 347120 - 347845 | 25239.6 |
| hypothetical protein | SHM7688_00320 | Q1GK36 | Positive | 347842 - 348459 | 22346.1 |
| 50s ribosomal protein l23 | SHM7688_00321 | Q1GK35 | Positive | 348456 - 348752 | 10709.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
