Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00302 | Not Available | Positive | 324738 - 325319 | 20327.5 |
| cobalt transport protein cbiq | SHM7688_00303 | Not Available | Positive | 325319 - 326101 | 29067.0 |
| nickel import atp-binding protein niko | SHM7688_00304 | Q57CD8 | Positive | 326098 - 326748 | 23397.4 |
| aspartate chemoreceptor protein | SHM7688_00305 | P21822 | Positive | 327104 - 328558 | 52468.5 |
| autoinducer 2 sensor kinase/phosphatase luxq | SHM7688_00306 | Q9KLK7 | Positive | 328924 - 331113 | 80830.9 |
| multidrug resistance protein mdtn | SHM7688_00307 | Not Available | Positive | 331466 - 332890 | 51624.1 |
| chitooligosaccharide synthase nodc | SHM7688_00308 | Q52463 | Positive | 332883 - 334469 | 61366.3 |
| alginate biosynthesis protein alga | SHM7688_00309 | P0C7J3 | Positive | 334568 - 335983 | 51262.0 |
| hypothetical protein | SHM7688_00310 | Not Available | Negative | 335959 - 336192 | 8767.44 |
| gdp-mannose 6-dehydrogenase | SHM7688_00311 | P59793 | Positive | 336228 - 337622 | 49801.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
