Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein tolr | SHM7688_00292 | Not Available | Negative | 314096 - 314467 | 13108.3 |
| colicin uptake protein tolq | SHM7688_00293 | Not Available | Negative | 314473 - 315483 | 35165.1 |
| vibriobactin utilization protein viub | SHM7688_00294 | Not Available | Negative | 315480 - 316520 | 38538.6 |
| putative siderophore transport system atp-binding protein yusv | SHM7688_00295 | O32188 | Negative | 316532 - 317314 | 28306.3 |
| ferric enterobactin transport system permease protein fepg | SHM7688_00296 | P23877 | Negative | 317314 - 318330 | 35127.3 |
| putative siderophore transport system permease protein yfiz precursor | SHM7688_00297 | O31568 | Negative | 318327 - 319355 | 35306.8 |
| putative siderophore-binding lipoprotein yfiy precursor | SHM7688_00298 | O31567 | Negative | 319352 - 320344 | 36109.0 |
| ferric hydroxamate uptake | SHM7688_00299 | Q47162 | Negative | 320548 - 322758 | 80058.5 |
| nickel uptake substrate-specific transmembrane region | SHM7688_00300 | Not Available | Positive | 323337 - 324122 | 28271.4 |
| energy-coupling factor transporter probable substrate-capture protein nikmn | SHM7688_00301 | P44274 | Positive | 324130 - 324741 | 20412.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
