Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00282 | Not Available | Negative | 304481 - 304576 | 3199.12 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SHM7688_00283 | Q7V990 | Positive | 304915 - 305874 | 34568.2 |
| 4-hydroxyproline epimerase | SHM7688_00284 | Q5LKW3 | Positive | 305865 - 306794 | 32242.4 |
| d-amino acid dehydrogenase small subunit | SHM7688_00285 | Q9RAE6 | Positive | 306899 - 308143 | 44748.8 |
| proline racemase | SHM7688_00286 | A0NXQ9 | Positive | 308176 - 309201 | 36620.7 |
| (2r)-3-sulfolactate dehydrogenase (nadp(+)) | SHM7688_00287 | Q4KGT8 | Negative | 309259 - 310275 | 36526.9 |
| carbon starvation induced regulator | SHM7688_00288 | Not Available | Positive | 310439 - 311119 | 26035.2 |
| nadp-dependent fatty aldehyde dehydrogenase | SHM7688_00289 | Q08IC0 | Positive | 311162 - 312760 | 55505.0 |
| hypothetical protein | SHM7688_00290 | Not Available | Negative | 312866 - 313711 | 29549.3 |
| protein tolr | SHM7688_00291 | Not Available | Negative | 313708 - 314091 | 13575.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
