Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsenate reductase (thioredoxin) | SHM7688_00272 | Not Available | Positive | 298140 - 298529 | 14442.9 |
| translation initiation factor if-1 | SHM7688_00273 | A8LS17 | Positive | 298727 - 298945 | 8312.23 |
| maf-like protein yhde | SHM7688_00274 | Q3J086 | Positive | 298979 - 299554 | 20368.7 |
| ribonuclease g | SHM7688_00275 | A0A0H3NGK0 | Positive | 299567 - 300601 | 36679.1 |
| dna gyrase inhibitor yacg | SHM7688_00276 | Q5LLE7 | Positive | 300598 - 300780 | 6782.02 |
| Trna-phe | Not Available | Not Available | Positive | 300859 - 300933 | Not Available |
| hypothetical protein | SHM7688_00278 | Not Available | Positive | 300977 - 301222 | 9739.12 |
| neu5ac-binding protein | SHM7688_00279 | Not Available | Positive | 301460 - 302458 | 36436.2 |
| trap-type c4-dicarboxylate transport system, small permease component | SHM7688_00280 | Not Available | Positive | 302541 - 303095 | 20783.1 |
| neu5ac permease | SHM7688_00281 | P40800 | Positive | 303092 - 304381 | 45194.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
