Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-2-oxovalerate aldolase | SHM7688_00262 | O05151 | Negative | 288760 - 289542 | 27060.4 |
| cyclolysin | SHM7688_00263 | Not Available | Negative | 289678 - 291630 | 67456.7 |
| Trna-thr | Not Available | Not Available | Positive | 292447 - 292521 | Not Available |
| hypothetical protein | SHM7688_00265 | Not Available | Positive | 292609 - 292785 | 6526.73 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | SHM7688_00266 | Q5LL90 | Positive | 292785 - 294053 | 44763.5 |
| hypothetical protein | SHM7688_00267 | Not Available | Positive | 294050 - 294529 | 17456.8 |
| putative acetyltransferase | SHM7688_00268 | Not Available | Positive | 294526 - 295029 | 17986.1 |
| histidinol dehydrogenase | SHM7688_00269 | Q5LL27 | Positive | 295081 - 296382 | 45765.3 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | SHM7688_00270 | Q1RKB7 | Negative | 296616 - 297386 | 26767.9 |
| hypothetical protein | SHM7688_00271 | Q1GLD5 | Positive | 297550 - 298029 | 18119.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
