Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin reductase | SHM7688_00252 | Q92I02 | Positive | 275321 - 276262 | 33580.2 |
| adenylate cyclase 1 | SHM7688_00253 | P43524 | Positive | 276449 - 278128 | 60481.4 |
| putative bifunctional sat/aps kinase | SHM7688_00254 | Q8J0I4 | Positive | 278244 - 280319 | 76937.7 |
| immunogenic protein mpt70 precursor | SHM7688_00255 | P74615 | Negative | 280449 - 280949 | 17022.7 |
| hypothetical protein | SHM7688_00256 | Not Available | Positive | 281293 - 282420 | 41121.4 |
| choloylglycine hydrolase | SHM7688_00257 | P54965 | Positive | 282513 - 283634 | 40149.6 |
| purine-binding protein precursor | SHM7688_00258 | Q2YKI6 | Negative | 283704 - 284783 | 38328.0 |
| urea abc transporter, permease protein urtb | SHM7688_00259 | D4GPW1 | Negative | 284827 - 285747 | 31748.1 |
| beta-methylgalactoside transporter inner membrane component | SHM7688_00260 | D4GPW2 | Negative | 285747 - 286826 | 38118.8 |
| galactose/methyl galactoside import atp-binding protein mgla | SHM7688_00261 | D4GPW3 | Negative | 286823 - 288367 | 54598.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
