Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase | SHM7688_00242 | Not Available | Positive | 269643 - 269906 | 10156.3 |
| hypothetical protein | SHM7688_00243 | P24577 | Positive | 269942 - 270253 | 12464.0 |
| putative transposase orfb | SHM7688_00244 | Not Available | Negative | 270481 - 271323 | 32566.9 |
| transposase | SHM7688_00245 | P17985 | Negative | 271359 - 271622 | 10004.1 |
| glutathione-regulated potassium-efflux system ancillary protein keff | SHM7688_00246 | P45245 | Negative | 271762 - 272211 | 16175.0 |
| hypothetical protein | SHM7688_00247 | Not Available | Negative | 272448 - 272675 | 7341.02 |
| virulence-regulating protein virs | SHM7688_00248 | Not Available | Positive | 272867 - 273889 | 37746.9 |
| hypothetical protein | SHM7688_00249 | Not Available | Negative | 273893 - 274555 | 24381.8 |
| leucine-responsive regulatory protein | SHM7688_00250 | P56901 | Negative | 274603 - 275103 | 18501.3 |
| hypothetical protein | SHM7688_00251 | Not Available | Positive | 275165 - 275260 | 3468.16 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
