Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aliphatic nitrilase | SHM7688_00232 | Q6RWG0 | Negative | 260463 - 261443 | 35647.8 |
| family protein | SHM7688_00233 | Not Available | Negative | 261554 - 262036 | 17575.3 |
| putative hth-type transcriptional regulator ydcr | SHM7688_00234 | Q01856 | Positive | 262300 - 263664 | 49798.5 |
| hypothetical protein | SHM7688_00235 | Not Available | Negative | 263985 - 264566 | 21771.9 |
| a-factor biosynthesis hotdog domain protein | SHM7688_00236 | Not Available | Negative | 264626 - 265411 | 29037.6 |
| hypothetical protein | SHM7688_00237 | Not Available | Negative | 265458 - 265622 | 5793.7 |
| hth-type transcriptional activator ampr | SHM7688_00238 | P0A2Q3 | Negative | 265930 - 266874 | 34107.1 |
| l-glyceraldehyde 3-phosphate reductase | SHM7688_00239 | A2XRZ0 | Positive | 266922 - 267905 | 35826.5 |
| 4-carboxymuconolactone decarboxylase | SHM7688_00240 | P29911 | Positive | 267902 - 268300 | 14092.9 |
| sugar efflux transporter b | SHM7688_00241 | Q02SS7 | Positive | 268319 - 269506 | 40487.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
