Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyltransferase (gnat) family protein | SHM7688_00222 | Not Available | Positive | 249386 - 250225 | 29733.1 |
| gcv operon activator | SHM7688_00223 | Not Available | Negative | 250370 - 251263 | 33192.7 |
| trimethylamine:corrinoid methyltransferase | SHM7688_00224 | Not Available | Positive | 251449 - 253026 | 57407.3 |
| putative n-methylproline demethylase | SHM7688_00225 | O87278 | Positive | 253053 - 255098 | 74941.5 |
| putative biosynthetic protein, family | SHM7688_00226 | Not Available | Negative | 255485 - 256306 | 30545.4 |
| putative oxidoreductase czco | SHM7688_00227 | Q5L2G3 | Negative | 256303 - 257559 | 47150.2 |
| family protein | SHM7688_00228 | Not Available | Negative | 257571 - 257849 | 10290.2 |
| thiamine-monophosphate kinase | SHM7688_00229 | Q55946 | Negative | 257842 - 258828 | 34852.7 |
| hypothetical protein | SHM7688_00230 | Not Available | Negative | 258825 - 259421 | 22676.7 |
| radical sam protein, family | SHM7688_00231 | Not Available | Negative | 259370 - 260470 | 39049.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
