Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoquinoline 1-oxidoreductase subunit beta | SHM7688_00212 | Not Available | Positive | 230803 - 232989 | 76778.8 |
| asparagine synthase (glutamine-hydrolyzing) | SHM7688_00213 | Not Available | Positive | 233232 - 234779 | 58039.4 |
| hypothetical protein | SHM7688_00214 | Not Available | Positive | 234826 - 235803 | 36877.9 |
| gamma-gcs-gs | SHM7688_00215 | Q65RX0 | Positive | 235844 - 238306 | 88310.6 |
| phosphocholine transferase ankx | SHM7688_00216 | Not Available | Positive | 238426 - 240765 | 83827.9 |
| hypothetical protein | SHM7688_00217 | Not Available | Positive | 241178 - 243076 | 63172.1 |
| bacteriocin biosynthesis docking scaffold, sagd family | SHM7688_00218 | Not Available | Positive | 243194 - 245440 | 82416.9 |
| sagb-type dehydrogenase domain protein | SHM7688_00219 | Not Available | Positive | 245452 - 246861 | 50667.6 |
| hypothetical protein | SHM7688_00220 | Not Available | Positive | 246861 - 248495 | 58804.4 |
| fumarylpyruvate hydrolase | SHM7688_00221 | Q86I22 | Positive | 248568 - 249254 | 24589.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
